シアソートで二次元格子を整列する
シアソートを使用する
シアソート (shear sort) は、要素を正方形の格子(\(\sqrt{n} \times \sqrt{n}\))に並べ、行と列を交互に整列させていく。
本質的には次の二種類のフェーズを繰り返す。
- 行フェーズ: 各行を、偶数行は左から昇順・奇数行は右から昇順(左へ値が大きくなる並び)になるように整える。いわゆる蛇行方向が交互になる行ソートである。
- 列フェーズ: 各列を、上から下へ昇順になるように整える。
二次元格子上の行・列整列を繰り返す並列向けソートで、要素数 N に対し \(\Theta(\sqrt{N} \log N)\) ステップで収まる。行・列の内部ソートが不安定なら全体も不安定になる。
バブルソートやクイックソートが一次元のインデックス列を直接いじるのに対し、シアソートは二次元インデックスと「同じ行・同じ列だけが比較される」という通信制約が前提になる点が対照的である。
procedure shear_sort_rows_then_cols(A, side)
repeat until snake_order_sorted(A, side)
for row from 0 to side - 1
if row is even then
sort_row_ascending_left_to_right(A, row)
else
sort_row_descending_left_to_right(A, row)
for col from 0 to side - 1
sort_column_ascending_top_to_bottom(A, col)
蛇行順で昇順になった時点では、行優先に左から読むとまだ入れ替わったように見えることがある。実運用や見やすい一次元配列に落とすときは、文献でも触れられるように仕上げでもう一度だけ行方向に処理を足す(このデモでは各行をすべて昇順にそろえる)と、行優先読みでも昇順になる。
一次元配列だけを対象にしたソートに比べて、列の交換では画面上離れた二本の棒が動く一方で、行内の交換は隣同士に見える。
類似アルゴリズムとの相違点
バブルソートやロムート分割型クイックソートは一次元配列を直接変更する。シアソートは二次元格子の行・列整列だけが許され、並列通信モデルが前提である。
時間計算量および空間計算量を計測する
| Size | Average time (s) | Maximum time (s) | Average memory (KiB) | Maximum memory (KiB) |
|---|---|---|---|---|
| 256 | 0.000020 | 0.000120 | 4 | 4 |
| 512 | 0.000049 | 0.000122 | 8 | 8 |
| 1024 | 0.000106 | 0.000197 | 16 | 16 |
| 2048 | 0.000283 | 0.000444 | 32 | 32 |
| 4096 | 0.000631 | 0.001362 | 64 | 64 |
| 8192 | 0.001693 | 0.002772 | 128 | 128 |
| 16384 | 0.004479 | 0.007605 | 256 | 256 |
| 32768 | 0.012490 | 0.017758 | 514 | 514 |
| 65536 | 0.038687 | 0.055104 | 1024 | 1024 |
| 131072 | 0.096080 | 0.142066 | 2053 | 2053 |
| 262144 | 0.305402 | 0.423273 | 4096 | 4096 |
計測に使用したコードを表示する
#!/usr/bin/env swift
import Foundation
// This standalone Swift driver creates the same temporary Docker build
// context as the former shell wrapper. The benchmark program itself remains
// embedded below so readers can copy one complete, reproducible file.
struct BenchmarkError: Error, CustomStringConvertible {
let message: String
var description: String { message }
init(_ message: String) {
self.message = message
}
}
func runCommand(_ executable: String, _ arguments: [String]) throws {
let process = Process()
process.executableURL = URL(fileURLWithPath: "/usr/bin/env")
process.arguments = [executable] + arguments
process.standardInput = FileHandle.standardInput
process.standardOutput = FileHandle.standardOutput
process.standardError = FileHandle.standardError
do {
try process.run()
} catch {
throw BenchmarkError("Could not start \(executable): \(error)")
}
process.waitUntilExit()
guard process.terminationStatus == 0 else {
throw BenchmarkError(
"Command failed (\(process.terminationStatus)): " +
"\(executable) \(arguments.joined(separator: " "))"
)
}
}
do {
// The UUID avoids collisions when two benchmark copies are run at once.
let workdir = FileManager.default.temporaryDirectory
.appendingPathComponent("swift-sort-benchmark-\(UUID().uuidString)")
try FileManager.default.createDirectory(at: workdir, withIntermediateDirectories: true)
defer { try? FileManager.default.removeItem(at: workdir) }
// A raw Swift string is used so the nested main.swift keeps its own
// interpolation expressions such as \(seed) until Docker compiles it.
let dockerfile = #"""
FROM swift:6.0
WORKDIR /app
RUN cat > alloc_track.c <<'ALLOC'
#define _GNU_SOURCE
#include <dlfcn.h>
#include <malloc.h>
#include <stdatomic.h>
#include <stddef.h>
#include <stdint.h>
#include <stdlib.h>
#include <string.h>
static atomic_size_t live_bytes = 0;
static atomic_size_t peak_bytes = 0;
static void *(*real_malloc)(size_t) = NULL;
static void *(*real_calloc)(size_t, size_t) = NULL;
static void *(*real_realloc)(void *, size_t) = NULL;
static void (*real_free)(void *) = NULL;
static void init_reals(void) {
if (real_malloc) {
return;
}
real_malloc = (void *(*)(size_t))dlsym(RTLD_NEXT, "malloc");
real_calloc = (void *(*)(size_t, size_t))dlsym(RTLD_NEXT, "calloc");
real_realloc = (void *(*)(void *, size_t))dlsym(RTLD_NEXT, "realloc");
real_free = (void (*)(void *))dlsym(RTLD_NEXT, "free");
}
static void record_alloc(size_t size) {
size_t live = atomic_fetch_add(&live_bytes, size) + size;
size_t peak = atomic_load(&peak_bytes);
while (live > peak) {
if (atomic_compare_exchange_weak(&peak_bytes, &peak, live)) {
break;
}
}
}
void alloc_track_reset_peak(void) {
atomic_store(&peak_bytes, atomic_load(&live_bytes));
}
size_t alloc_track_live(void) { return atomic_load(&live_bytes); }
size_t alloc_track_peak(void) { return atomic_load(&peak_bytes); }
void *malloc(size_t size) {
init_reals();
void *p = real_malloc(size);
if (p) {
record_alloc(malloc_usable_size(p));
}
return p;
}
void *calloc(size_t nmemb, size_t size) {
init_reals();
void *p = real_calloc(nmemb, size);
if (p) {
record_alloc(malloc_usable_size(p));
}
return p;
}
void *realloc(void *ptr, size_t size) {
init_reals();
size_t old_size = 0;
if (ptr) {
old_size = malloc_usable_size(ptr);
}
void *p = real_realloc(ptr, size);
if (p) {
atomic_fetch_sub(&live_bytes, old_size);
record_alloc(malloc_usable_size(p));
} else if (size == 0) {
atomic_fetch_sub(&live_bytes, old_size);
}
return p;
}
void free(void *ptr) {
init_reals();
if (ptr) {
atomic_fetch_sub(&live_bytes, malloc_usable_size(ptr));
real_free(ptr);
}
}
ALLOC
RUN cat > main.swift <<'SWIFT'
import Foundation
#if canImport(Glibc)
import Glibc
#elseif canImport(Darwin)
import Darwin
#endif
@_silgen_name("alloc_track_live") func alloc_track_live() -> Int
@_silgen_name("alloc_track_peak") func alloc_track_peak() -> Int
@_silgen_name("alloc_track_reset_peak") func alloc_track_reset_peak()
extension UnsafeMutableBufferPointer where Element == Int {
func swapAt(_ i: Int, _ j: Int) {
let t = self[i]; self[i] = self[j]; self[j] = t
}
}
let MIN_POWER: Int = 8
let MAX_POWER: Int = 18
let RUNS: Int = 8192
func insertion_sort(_ a: inout [Int]) {
a.withUnsafeMutableBufferPointer { insertion_sort($0) }
}
func insertion_sort(_ a: UnsafeMutableBufferPointer<Int>) {
if a.count < 2 {
return
}
for i in 1..<a.count {
var j = i
while j > 0 && a[j - 1] > a[j] {
a.swapAt(j - 1, j)
j -= 1
}
}
}
func shear_sort(_ a: inout [Int]) {
a.withUnsafeMutableBufferPointer { shear_sort($0) }
}
func shear_sort(_ a: UnsafeMutableBufferPointer<Int>) {
let n = a.count
if n <= 1 {
return
}
let side = Int((Double(n)).squareRoot().rounded(.up))
var grid = [Int](repeating: Int.max, count: side * side)
for i in 0..<n {
grid[i] = a[i]
}
let phases = (Int(log2(Double(side)).rounded(.up)) + 1) * 2
for _ in 0..<phases {
for r in 0..<side {
var row = Array(grid[(r * side)..<((r + 1) * side)])
insertion_sort(&row)
if r % 2 == 1 {
row.reverse()
}
for c in 0..<side {
grid[r * side + c] = row[c]
}
}
for c in 0..<side {
var col = [Int]()
col.reserveCapacity(side)
for r in 0..<side {
col.append(grid[r * side + c])
}
insertion_sort(&col)
for r in 0..<side {
grid[r * side + c] = col[r]
}
}
}
var out = [Int]()
out.reserveCapacity(n)
for r in 0..<side {
if r % 2 == 0 {
for c in 0..<side {
if grid[r * side + c] != Int.max {
out.append(grid[r * side + c])
}
}
} else {
for c in stride(from: side - 1, through: 0, by: -1) {
if grid[r * side + c] != Int.max {
out.append(grid[r * side + c])
}
}
}
}
for i in 0..<n {
a[i] = out[i]
}
}
func benchmark_sort(_ array: inout [Int]) {
shear_sort(&array)
}
func is_non_decreasing(_ a: [Int]) -> Bool {
guard a.count >= 2 else { return true }
for i in 1..<a.count {
if a[i - 1] > a[i] { return false }
}
return true
}
func same_multiset(_ a: [Int], _ b: [Int]) -> Bool {
if a.count != b.count {
return false
}
var left = a
var right = b
left.sort()
right.sort()
return left == right
}
func check_correctness_case(_ label: String, _ input: [Int]) {
var input = input
let original = input
benchmark_sort(&input)
if !is_non_decreasing(input) {
fatalError("correctness case \(label): output is not sorted")
}
if !same_multiset(input, original) {
fatalError("correctness case \(label): elements were lost or added")
}
}
// Skip cases larger than the algorithm's measured size cap (MAX_POWER). That
// cap exists because larger inputs are impractically slow; forcing them here
// would stall the published measurement script before any table rows print.
func check_correctness_case_within_limit(_ label: String, _ input: [Int]) {
if input.count > (1 << MAX_POWER) {
return
}
check_correctness_case(label, input)
}
func few_unique_values(_ size: Int, _ unique: Int, _ seed: UInt64) -> [Int] {
var state = seed
var result = [Int]()
result.reserveCapacity(size)
for _ in 0..<size {
state ^= state << 13
state ^= state >> 7
state ^= state << 17
result.append(Int(state % UInt64(unique)) + 1)
}
return result
}
func run_correctness_checks() {
check_correctness_case("empty", [])
check_correctness_case("single", [42])
check_correctness_case("duplicates", [3, 1, 3, 2, 1, 2])
check_correctness_case("sorted", [1, 2, 3, 4, 5])
check_correctness_case("reverse", [5, 4, 3, 2, 1])
check_correctness_case("all_equal", [7, 7, 7, 7])
check_correctness_case("skewed_range", [1_000_000, 2, 1_000_001, 1, 999_999])
// Static-buffer Grail skips the in-buffer build when key collection is sparse
// (ideal_buffer = false). Exercising that path catches regressions in buffer gating.
check_correctness_case(
"few_keys_len16",
[2, 2, 2, 2, 2, 2, 2, 2, 4, 3, 1, 2, 3, 4, 1, 4]
)
// Seed 0 is a fixed point of the xorshift below, so it would degenerate into
// yet another all-equal case instead of a 4-value mix. Start at 1.
for seed in 1...32 {
check_correctness_case(
"few_keys_len32_seed_\(seed)",
few_unique_values(32, 4, UInt64(seed))
)
}
// Small-input cutoffs (insertion sort below 32 elements, etc.) hide duplicate-key
// bugs in the recursive path, so repeat the duplicate cases at the smallest
// benchmark size, which every algorithm must handle within reasonable time.
check_correctness_case("all_equal_len256", [Int](repeating: 7, count: 256))
for seed in 1...4 {
check_correctness_case(
"few_keys_len256_seed_\(seed)",
few_unique_values(256, 4, UInt64(seed))
)
}
// Blit's equal-key second sweep used to copy the whole range into a fixed
// 512-element swap; lengths above that must still sort without panicking.
// Respect MAX_POWER so algorithms with a low measured-size cap (slow,
// sleep) do not hang here for minutes or months.
check_correctness_case_within_limit("all_equal_len600", [Int](repeating: 7, count: 600))
for seed in 1...4 {
check_correctness_case_within_limit(
"few_keys_len2048_seed_\(seed)",
few_unique_values(2048, 4, UInt64(seed))
)
}
}
func shuffled(_ size: Int, seed: UInt64) -> [Int] {
guard size > 0 else { return [] }
var v = Array(1...size)
var state = seed
if size > 1 {
for i in stride(from: size - 1, through: 1, by: -1) {
state ^= state << 13
state ^= state >> 7
state ^= state << 17
let j = Int(state % UInt64(i + 1))
v.swapAt(i, j)
}
}
return v
}
func micros(_ d: Duration) -> UInt64 {
let c = d.components
let fromSeconds = UInt64(c.seconds) * 1_000_000
let fromAttos = UInt64(max(0, c.attoseconds / 1_000_000_000_000))
return fromSeconds + fromAttos
}
func padLeft(_ value: String, _ width: Int) -> String {
if value.count >= width {
return value
}
return String(repeating: " ", count: width - value.count) + value
}
func formatSeconds(_ micros: UInt64) -> String {
let whole = micros / 1_000_000
let frac = micros % 1_000_000
let fracStr = padLeft(String(frac), 6).replacingOccurrences(of: " ", with: "0")
return "\(whole).\(fracStr)"
}
func input_array(_ size: Int, seed: UInt64) -> [Int] {
shuffled(size, seed: seed)
}
/// Peak heap growth during `benchmark_sort`, in bytes (explicit buffers such as swap).
/// Kept in bytes so the parent can average before rounding; converting to KiB here
/// would truncate sub-KiB buffers to 0 in every run and hide them from the average.
func run_once(size: Int, seed: Int) -> (UInt64, Int) {
var array = input_array(size, seed: UInt64(seed))
let baseBytes = alloc_track_live()
alloc_track_reset_peak()
let start = ContinuousClock.now
benchmark_sort(&array)
let elapsed = ContinuousClock.now - start
let peakBytes = alloc_track_peak()
let auxBytes = max(0, peakBytes - baseBytes)
let expected: [Int] = size > 0 ? Array(1...size) : []
if array != expected {
fatalError("sort failed with seed \(seed) for size \(size)")
}
return (micros(elapsed), auxBytes)
}
func run_child(_ args: [String]) {
let size = Int(args[2])!
let seed = Int(args[3])!
let (elapsedUs, mem) = run_once(size: size, seed: seed)
print("\(elapsedUs) \(mem)")
}
let args = CommandLine.arguments
if args.count > 1 && args[1] == "--run-once" {
run_child(args)
} else {
run_correctness_checks()
let tableHeader =
"| \(padLeft("Size", 10)) | " +
"\(padLeft("Average time (s)", 16)) | " +
"\(padLeft("Maximum time (s)", 16)) | " +
"\(padLeft("Average memory (KiB)", 20)) | " +
"\(padLeft("Maximum memory (KiB)", 20)) |"
print(tableHeader)
print("|-----------:|-----------------:|-----------------:|---------------------:|---------------------:|")
for power in MIN_POWER...MAX_POWER {
let size = 1 << power
var totalTime: UInt64 = 0
var maxTime: UInt64 = 0
var totalMem = 0
var maxMem = 0
for seed in 1...RUNS {
let process = Process()
process.executableURL = URL(fileURLWithPath: args[0])
process.arguments = ["--run-once", "\(size)", "\(seed)"]
let stdout = Pipe()
let stderr = Pipe()
process.standardOutput = stdout
process.standardError = stderr
do {
try process.run()
} catch {
fatalError("failed to run benchmark child process: \(error)")
}
process.waitUntilExit()
if process.terminationStatus != 0 {
let err = String(data: stderr.fileHandleForReading.readDataToEndOfFile(), encoding: .utf8) ?? ""
fatalError("benchmark child process failed: \(err)")
}
let data = stdout.fileHandleForReading.readDataToEndOfFile()
let stdoutText = String(data: data, encoding: .utf8) ?? ""
let fields = stdoutText.split(whereSeparator: \.isWhitespace)
guard fields.count >= 2,
let elapsedUs = UInt64(fields[0]),
let auxMem = Int(fields[1]) else {
fatalError("invalid child process output: \(stdoutText)")
}
totalTime += elapsedUs
if elapsedUs > maxTime {
maxTime = elapsedUs
}
totalMem += auxMem
if auxMem > maxMem {
maxMem = auxMem
}
}
let avgTime = totalTime / UInt64(RUNS)
// Memory is summed in bytes and converted to KiB once, after averaging.
let avgMemKb = totalMem / RUNS / 1024
let maxMemKb = maxMem / 1024
let tableRow =
"| \(padLeft(String(size), 10)) | " +
"\(padLeft(formatSeconds(avgTime), 16)) | " +
"\(padLeft(formatSeconds(maxTime), 16)) | " +
"\(padLeft(String(avgMemKb), 20)) | " +
"\(padLeft(String(maxMemKb), 20)) |"
print(tableRow)
}
}
SWIFT
RUN clang -O2 -fPIC -shared alloc_track.c -o liballoc_track.so -ldl
RUN swiftc -Ounchecked -whole-module-optimization \
main.swift \
-o swift-benchmark \
-L. -lalloc_track \
-Xlinker -rpath -Xlinker /app
ENV LD_PRELOAD=/app/liballoc_track.so
CMD ["./swift-benchmark"]
"""#
try dockerfile.write(
to: workdir.appendingPathComponent("Dockerfile"),
atomically: true,
encoding: .utf8
)
// Keeping build and run as separate child processes preserves Docker's
// normal output and the original image tag used by the benchmark skill.
try runCommand("docker", ["build", "-t", "swift-benchmark", workdir.path])
try runCommand("docker", ["run", "--rm", "--init", "swift-benchmark"])
} catch {
fputs("\(error)\n", stderr)
exit(1)
}